Early 2000s Weird Fantasy
Based on this post and its notes
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ED Baker
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Cornelia Funke
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Garth Nix
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Philip Reeve
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Emily Rodda
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Artemis Fowl - Eoin Colfer
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Bartimaeus sequence - Jonathan Stroud
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Circle of Magic - Tamora Pierce
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Darkwood - ME Breen
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Dealing with Dragons - Patricia C. Wrede
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The Edge Chronicles - Paul Steward and Chris Ridell
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Eragon - Christopher Paolini
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Everlost - Neal Shusterman
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Fablehaven - Brandon Mull
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The Fire Within - Chris d'Lacey
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Gregor the Overlander - Suzanne Collins
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Graceling - Kristin Cashore
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The Land of Elyon Books - Patrick Carman
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May Bird and The Ever After - Jodi Lynn Anderson
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The Pinhoe Egg - Dianna Wynne Jones
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The Search for Wondla - Tony Diterlizzi
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The Secrets of the Immortal Nicholas Flamel - Michael Scott
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Septimus Heap Series - Angie Sage
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The Sisters Grimm - Michael Buckley
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The Spiderwick Chronicles
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Children of the Lamp - PB Kerr
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Changeling - Delia Sherman
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Mira, Mirror - Mette Ivie Harrison
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The City in the Lake - Rachel Neumeier
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The Cronus Chronicles - Anne Ursu
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Olivia Kidney and the Exit Academy - Elen Potter
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The Last Dragon - Silvana De Mari
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Jinx - Sage Blackwood
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Leven Thumps and the Eyes of the Want - Obert Skye
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The Mousehunter - Alex Milway
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Dragon Slippers - Jessica Day George
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Ranger's Apprentice - John Flanagan
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The Magic Thief - Sarah Prineas
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Silver Dragon Codex - RD Henham
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The Tapestry: The Hound of Rowan - (unreadable)
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Myth-o-Mania: Have a Hot Time, Hades - (unreadable)
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Icemark Chronicles - Stuart Hill
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Fantasy: An Artist's Realm - Ben Boos
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The Savage Damsel and the Dwarf - Gerald Morris
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The Anybodies - NE Bode
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The Great Tree of Avalon - TA Barron
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The Princess of Bamarre - Gail Carson Levine
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The Wind Singer - William Nicholson